BornProfiler
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BornProfiler
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Index
A
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B
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C
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E
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F
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G
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H
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I
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
accumulate() (bornprofiler.analysis.Analyzer method)
AnalyzeElec (class in bornprofiler.analysis)
AnalyzeElec3D (class in bornprofiler.analysis)
Analyzer (class in bornprofiler.analysis)
anyopen() (in module bornprofiler.utilities)
APBSmem (class in bornprofiler.electrostatics)
APBSnomem (class in bornprofiler.electrostatics)
asiterable() (in module bornprofiler.utilities)
AttributeDict (class in bornprofiler.utilities)
B
BornAPBSmem (class in bornprofiler.electrostatics)
bornprofiler.analysis (module)
bornprofiler.bpio (module)
bornprofiler.config (module)
bornprofiler.core (module)
bornprofiler.electrostatics (module)
bornprofiler.log (module)
bornprofiler.utilities (module)
BPbase (class in bornprofiler.core)
C
cfg (in module bornprofiler.config)
check_APBS() (in module bornprofiler.config)
check_drawmembrane() (in module bornprofiler.config)
check_setup() (in module bornprofiler.config)
clear_handlers() (in module bornprofiler.log)
CONFIGNAME (in module bornprofiler.config)
configuration (in module bornprofiler.config)
create() (in module bornprofiler.log)
E
emit() (bornprofiler.log.NullHandler method)
environment variable
PATH
export() (bornprofiler.analysis.Analyzer method)
F
find_first() (in module bornprofiler.utilities)
find_missing_windows() (bornprofiler.analysis.Analyzer method)
float_or_None() (in module bornprofiler.bpio)
G
generate() (bornprofiler.core.MPlaceion method)
(bornprofiler.core.Placeion method)
(bornprofiler.electrostatics.APBSmem method)
(bornprofiler.electrostatics.APBSnomem method)
(bornprofiler.electrostatics.BornAPBSmem method)
generateMem() (bornprofiler.core.MPlaceion method)
get_apbsmem_kwargs() (bornprofiler.bpio.RunParameters method)
get_apbsnomem_kwargs() (bornprofiler.bpio.RunParameters method)
get_bornprofile_kwargs() (bornprofiler.bpio.RunParameters method)
get_bornprofilenomem_kwargs() (bornprofiler.bpio.RunParameters method)
get_configuration() (in module bornprofiler.config)
get_files() (in module bornprofiler.analysis)
get_MemBornSetup() (bornprofiler.core.MPlaceion method)
get_taskid() (bornprofiler.core.BPbase method)
get_template() (in module bornprofiler.config)
get_templates() (in module bornprofiler.config)
Grid() (bornprofiler.analysis.AnalyzeElec3D method)
H
histogramdd() (bornprofiler.analysis.AnalyzeElec3D method)
I
in_dir() (in module bornprofiler.utilities)
Ion (class in bornprofiler.core)
IONS (in module bornprofiler.core)
iterable() (in module bornprofiler.utilities)
M
MPlaceion (class in bornprofiler.core)
N
ngridpoints() (in module bornprofiler.core)
NullHandler (class in bornprofiler.log)
O
openany() (in module bornprofiler.utilities)
P
PATH
path (in module bornprofiler.config)
path() (in module bornprofiler.bpio)
Placeion (class in bornprofiler.core)
plot() (bornprofiler.analysis.AnalyzeElec method)
PQRReader (class in bornprofiler.bpio)
process_bornprofile_kwargs() (bornprofiler.core.MPlaceion method)
R
ranges() (bornprofiler.analysis.AnalyzeElec3D method)
read() (bornprofiler.analysis.Analyzer method)
read_dat_to_array() (in module bornprofiler.bpio)
read_template() (in module bornprofiler.bpio)
readPoints() (bornprofiler.core.BPbase method)
(in module bornprofiler.bpio)
readPointsDat() (in module bornprofiler.bpio)
readPointsPDB() (in module bornprofiler.bpio)
readPQR() (bornprofiler.core.BPbase method)
(bornprofiler.core.Placeion method)
realpath() (in module bornprofiler.utilities)
remove_bornprofile_keywords (bornprofiler.core.MPlaceion attribute)
resource_basename() (in module bornprofiler.config)
RunParameters (class in bornprofiler.bpio)
S
schedule (bornprofiler.core.MPlaceion attribute)
setup() (in module bornprofiler.config)
suffices (bornprofiler.electrostatics.BornAPBSmem attribute)
T
templates (in module bornprofiler.config)
TEMPLATES (in module bornprofiler.electrostatics)
U
unlink_f() (in module bornprofiler.utilities)
V
vars (bornprofiler.electrostatics.APBSmem attribute)
(bornprofiler.electrostatics.APBSnomem attribute)
(bornprofiler.electrostatics.BornAPBSmem attribute)
W
withextsep() (in module bornprofiler.utilities)
write() (bornprofiler.bpio.RunParameters method)
writeJob() (bornprofiler.core.MPlaceion method)
writePQRs() (bornprofiler.core.BPbase method)
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